Metadata-Version: 2.1
Name: neuralactivitycubic
Version: 0.0.1
Summary: Computation of local and signal-close-to-noise calcium activity
Author-email: Dennis Doll <ddoll@indocresearch.org>, Matvey Loshakov <mloshakov@indocresearch.org>
Project-URL: Homepage, https://github.com/Indoc-Research/NeuralActivityCubic
Project-URL: Issues, https://github.com/Indoc-Research/NeuralActivityCubic/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU Affero General Public License v3
Classifier: Operating System :: OS Independent
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: jupyterlab ==4.2.3
Requires-Dist: ipywidgets ==8.0.4
Requires-Dist: ipyfilechooser ==0.6.0
Requires-Dist: imageio ==2.31.4
Requires-Dist: imageio-ffmpeg ==0.4.9
Requires-Dist: matplotlib ==3.8.0
Requires-Dist: scipy ==1.11.4
Requires-Dist: pandas ==2.2.1
Requires-Dist: pybaselines ==1.1.0
Requires-Dist: roifile ==2024.5.24
Requires-Dist: shapely ==2.0.1

# NeuralActivityCubic
Indoc Research`s approach into [NeuralActivityCubic](https://github.com/jpits30/NeuronActivityTool), published by [Prada et al. 2018 (Plos Comp. Biol.)](https://doi.org/10.1371/journal.pcbi.1006054). The code you can find in this repository was the outcome of our Teams 6-hour Hackathon during our Christmas Retreat. We will provide more information on this project soon on our [website](https://www.indocresearch.eu/news).

# How to use
```python
import neuralactivitycubic as na3

na3.open_gui()
```

If you want to test it without any local installation, please click [>>here<<](https://mybinder.org/v2/gh/Indoc-Research/NeuralActivityCubic/HEAD?urlpath=lab/tree/NeuralActivityCubic_demo.ipynb) to launch the Jupyter Notebook directly in your Webbrowser. This will run a container hosted completely for free on [MyBinder](https://mybinder.org/).
