Metadata-Version: 2.4
Name: pypath-ewe
Version: 0.3.0
Summary: Python implementation of Ecopath with Ecosim (EwE) for food web modeling
Author: PyPath Development Team
License: MIT
Project-URL: Homepage, https://github.com/razinkele/PyPath
Project-URL: Documentation, https://razinkele.github.io/PyPath/
Project-URL: Repository, https://github.com/razinkele/PyPath
Keywords: ecology,ecosystem,food web,ecopath,ecosim,modeling
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy>=1.24
Requires-Dist: pandas>=2.0
Requires-Dist: scipy>=1.10
Requires-Dist: matplotlib>=3.7
Provides-Extra: interactive
Requires-Dist: plotly>=5.0; extra == "interactive"
Requires-Dist: networkx>=3.0; extra == "interactive"
Provides-Extra: spatial
Requires-Dist: geopandas>=0.12; extra == "spatial"
Requires-Dist: folium>=0.14; extra == "spatial"
Requires-Dist: shapely>=2.0; extra == "spatial"
Provides-Extra: biodata
Requires-Dist: pyworms>=0.2.1; extra == "biodata"
Requires-Dist: pyobis>=0.3.0; extra == "biodata"
Requires-Dist: requests>=2.28; extra == "biodata"
Provides-Extra: numba
Requires-Dist: numba>=0.57; extra == "numba"
Provides-Extra: docs
Requires-Dist: mkdocs>=1.5; extra == "docs"
Requires-Dist: mkdocs-material>=9.0; extra == "docs"
Requires-Dist: mkdocstrings[python]>=0.24; extra == "docs"
Provides-Extra: dev
Requires-Dist: pytest>=7.0; extra == "dev"
Requires-Dist: pytest-cov>=4.0; extra == "dev"
Requires-Dist: black>=23.0; extra == "dev"
Requires-Dist: ruff>=0.1; extra == "dev"
Requires-Dist: mypy>=1.0; extra == "dev"
Provides-Extra: all
Requires-Dist: pypath-ewe[biodata,dev,docs,interactive,numba,spatial]; extra == "all"
Dynamic: license-file

# pypath-ewe

Python implementation of Ecopath with Ecosim (EwE) for food web modeling.

**pypath-ewe** provides a complete Python implementation of the Rpath ecosystem modeling approach, including:

- **Ecopath** -- mass-balance parameterization of food web models
- **Ecosim** -- time-dynamic simulation with forcing functions and fishing scenarios
- **Ecospace** -- spatially explicit ecosystem modeling with habitat maps and dispersal
- **Stanza groups** -- multi-stanza (age-structured) population modeling
- **EcoBase / EwE database** -- import models from online databases

## Installation

```bash
pip install pypath-ewe
```

With optional dependencies:

```bash
pip install pypath-ewe[interactive]   # plotly, networkx
pip install pypath-ewe[spatial]       # geopandas, folium, shapely
pip install pypath-ewe[biodata]       # pyworms, pyobis for species data
pip install pypath-ewe[all]           # everything
```

## Quick Start

```python
from pypath import rpath, rsim_run, create_rpath_params

# Create a simple model
params = create_rpath_params(groups=["Phytoplankton", "Zooplankton", "Fish"], ...)
model = rpath(params)
output = rsim_run(model, years=50)
```

## Documentation

Full documentation: <https://razinkele.github.io/PyPath/>

## License

MIT
