LICENSE
README.md
pyproject.toml
src/pypath/__init__.py
src/pypath/analysis/__init__.py
src/pypath/analysis/prebalance.py
src/pypath/core/__init__.py
src/pypath/core/adjustments.py
src/pypath/core/analysis.py
src/pypath/core/autofix.py
src/pypath/core/constants.py
src/pypath/core/ecopath.py
src/pypath/core/ecosim.py
src/pypath/core/ecosim_advanced.py
src/pypath/core/ecosim_deriv.py
src/pypath/core/forcing.py
src/pypath/core/optimization.py
src/pypath/core/params.py
src/pypath/core/plotting.py
src/pypath/core/stanzas.py
src/pypath/ibm/__init__.py
src/pypath/ibm/base.py
src/pypath/ibm/behavior.py
src/pypath/ibm/bioenergetics.py
src/pypath/ibm/integration.py
src/pypath/ibm/predation.py
src/pypath/ibm/reproduction.py
src/pypath/ibm/smelt.py
src/pypath/io/__init__.py
src/pypath/io/biodata.py
src/pypath/io/ecobase.py
src/pypath/io/ewemdb.py
src/pypath/io/utils.py
src/pypath/spatial/__init__.py
src/pypath/spatial/connectivity.py
src/pypath/spatial/dispersal.py
src/pypath/spatial/ecospace_params.py
src/pypath/spatial/environmental.py
src/pypath/spatial/external_flux.py
src/pypath/spatial/fishing.py
src/pypath/spatial/gis_utils.py
src/pypath/spatial/habitat.py
src/pypath/spatial/integration.py
src/pypath_ewe.egg-info/PKG-INFO
src/pypath_ewe.egg-info/SOURCES.txt
src/pypath_ewe.egg-info/dependency_links.txt
src/pypath_ewe.egg-info/requires.txt
src/pypath_ewe.egg-info/top_level.txt
tests/test_adjustments.py
tests/test_analysis.py
tests/test_backward_compatibility.py
tests/test_biodata.py
tests/test_biodata_deps.py
tests/test_biodata_integration.py
tests/test_biodata_workflow.py
tests/test_debug_forcing.py
tests/test_detritus_consumption.py
tests/test_detritus_fish_detfrac_addition.py
tests/test_detritus_fish_discard_reproducer.py
tests/test_detritus_nointegrate.py
tests/test_diet_rewiring.py
tests/test_dispersal.py
tests/test_ecobase.py
tests/test_ecopath.py
tests/test_ecosim.py
tests/test_ecosim_qlink.py
tests/test_ecosim_stanzas.py
tests/test_environmental.py
tests/test_ewemdb.py
tests/test_file_format_support.py
tests/test_forcing.py
tests/test_grid_creation.py
tests/test_habitat.py
tests/test_ibm_base.py
tests/test_ibm_behavior.py
tests/test_ibm_bioenergetics.py
tests/test_ibm_ecosim_integration.py
tests/test_ibm_integration.py
tests/test_ibm_predation.py
tests/test_ibm_reproduction.py
tests/test_ibm_smelt.py
tests/test_ibm_spatial.py
tests/test_import_diet.py
tests/test_instrumentation_ab_direct.py
tests/test_instrumentation_deprecation.py
tests/test_instrumentation_indices.py
tests/test_interdetrital_ee.py
tests/test_irregular_grids.py
tests/test_lt_model.py
tests/test_optimization_integration.py
tests/test_optimization_scenarios.py
tests/test_optimization_unit.py
tests/test_output_shape.py
tests/test_pb_estimation.py
tests/test_plotting.py
tests/test_q_matrix_shapes.py
tests/test_rpath_compatibility.py
tests/test_rpath_diagnostics_meta.py
tests/test_rpath_ecosim_core.py
tests/test_rpath_m0_persistence.py
tests/test_rpath_macrobenthos_ab_parity.py
tests/test_rpath_nointegrate.py
tests/test_rpath_qq_provided_strict.py
tests/test_rpath_reference.py
tests/test_rpath_seabirds_regression.py
tests/test_rsim_detritus_link_coverage.py
tests/test_rsim_integration_fish_discard_effect.py
tests/test_rsim_output_contracts.py
tests/test_seabirds_monthly_m0_flag.py
tests/test_seabirds_q_diff_threshold.py
tests/test_seabirds_termwise_comparison.py
tests/test_spatial_api_smoke.py
tests/test_spatial_ecosim_integration.py
tests/test_spatial_fishing.py
tests/test_spatial_integration.py
tests/test_spatial_integration_behaviors.py
tests/test_spatial_performance.py
tests/test_spatial_validation.py
tests/test_stanzas.py