torch==2.14.0
pytorch-lightning==2.6.6
pytorch-metric-learning==2.9.0
numpy==2.4.2
pandas==3.0.1
scikit-learn==1.8.0
scipy==1.17.1
PyYAML==6.0.3
mudata<0.4,>=0.3.10
anndata<0.14,>=0.10
zarr>=3
pyarrow>=15.0
matplotlib==3.10.8
seaborn==0.13.2
umap-learn==0.5.11
optuna>=3.0

[dev]
pytest>=8.0
pytest-cov>=4.0.0

[lint]
ruff==0.16.9
mypy>=1.10

[mofa]
mofapy2
mofax
