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CSB v1.2.3.617
Package csb
:: Package bio
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Package bio
source code
Core bioinformatics abstractions and I/O.
Submodules
csb.bio.fragments
:
APIs for working with protein structure fragments and libraries.
csb.bio.fragments.rosetta
:
Rosetta fragment libraries.
csb.bio.hmm
:
HHpred and Hidden Markov Model APIs.
csb.bio.hmm.pseudocounts
csb.bio.io
:
I/O for various biological file formats.
csb.bio.io.clans
:
Classes for parsing/manipulating/writing CLANS (by Tancred Frickey) files
csb.bio.io.cs
:
Simple NMR STAR chemical shift readers.
csb.bio.io.dssp
:
DSSP Parser
csb.bio.io.fasta
:
FASTA format sequence I/O.
csb.bio.io.hhpred
:
HHpred-related format parsers.
csb.bio.io.mrc
:
Cryo-EM density map I/O
csb.bio.io.noe
:
Simple XEASY and Sparky peak list parsers.
csb.bio.io.procheck
:
Procheck parser
csb.bio.io.psipred
:
PSIPRED Parser
csb.bio.io.svg
:
Build SVG diagrams from various csb objects.
csb.bio.io.vasco
:
VASCO Chemical Shift format parser.
csb.bio.io.whatif
:
Simple WhatIf/WhatCheck Summary parser
csb.bio.io.wwpdb
:
PDB structure parsers, format builders and database providers.
csb.bio.nmr
:
NMR related objects.
csb.bio.sequence
:
Sequence and sequence alignment APIs.
csb.bio.sequence.alignment
:
Collection of sequence alignment algorithms.
csb.bio.structure
:
3D and secondary structure APIs.
csb.bio.utils
:
Computational utility functions.
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